Interactive explorer (Shiny)¶
The Shiny explorer is a hosted dashboard. It shows the full benchmark results for every method and dataset, without writing code.
What you can explore¶
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scIB metrics
Batch-correction and bio-conservation scores per method, as bubble tables and overall rankings.
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Integration
Embeddings, side by side, for each integration scenario.
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Feature selection
Overlap and rank correlation of the features each method selects.
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Time and memory
Runtime and peak memory per method.
In Python¶
mtb.load_results reads the stored tables that ship with the package. They
cover the demo datasets only. mtb.plot.bubble draws them, as
Load and plot results shows.